Overview  Package  Class  Tree  Index  Help 
NeoBio API
 PREV   NEXT FRAMES    NO FRAMES    

Constant Field Values

Contents
neobio.alignment.*

neobio.alignment.CharSequence
protected static final char COMMENT_CHAR 62

neobio.alignment.CrochemoreLandauZivUkelson
protected static final byte DIAGONAL_DIRECTION 2
protected static final byte LEFT_DIRECTION 1
protected static final byte STOP_DIRECTION 0
protected static final byte TOP_DIRECTION 3

neobio.alignment.CrochemoreLandauZivUkelsonLocalAlignment
protected static final byte TYPE_C_PATH 2
protected static final byte TYPE_CROSSING_PATH 0
protected static final byte TYPE_E_PATH 3
protected static final byte TYPE_S_PATH 1

neobio.alignment.FactorSequence
protected static final char COMMENT_CHAR 62

neobio.alignment.PairwiseAlignmentAlgorithm
protected static final char APPROXIMATE_MATCH_TAG 43
protected static final char GAP_CHARACTER 45
protected static final char GAP_TAG 32
protected static final char MATCH_TAG 124
protected static final char MISMATCH_TAG 32

neobio.alignment.ScoringMatrix
protected static final char COMMENT_CHAR 35
protected static final char INDEL_CHAR 42

Overview  Package  Class  Tree  Index  Help 
SourceForge.net
 PREV   NEXT FRAMES    NO FRAMES    
http://neobio.sourceforge.net
NeoBio is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. NeoBio is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with NeoBio; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA.