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AlignmentBlock
BasicScoringScheme
CharSequence
CrochemoreLandauZivUkelson
CrochemoreLandauZivUkelsonGlobalAlignment
CrochemoreLandauZivUkelsonLocalAlignment
Factor
FactorSequence
IncompatibleScoringSchemeException
InvalidScoringMatrixException
InvalidSequenceException
LocalAlignmentBlock
Matrix
NeedlemanWunsch
NeoBio
NeoBio
OutMatrix
PairwiseAlignment
PairwiseAlignmentAlgorithm
PairwiseAlignmentFrame
RandomFactorSequenceGenerator
RandomSequenceGenerator
ScoringMatrix
ScoringScheme
Smawk
SmithWaterman
Trie
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