NeoBio API

Serialized Form


Package neobio.alignment

Class neobio.alignment.IncompatibleScoringSchemeException implements Serializable

Class neobio.alignment.InvalidScoringMatrixException implements Serializable

Class neobio.alignment.InvalidSequenceException implements Serializable

Class neobio.alignment.PairwiseAlignment implements Serializable

Serialized Fields

gapped_seq1

java.lang.String gapped_seq1
First gapped sequence.

 

score_tag_line

java.lang.String score_tag_line
The score tag line.

 

gapped_seq2

java.lang.String gapped_seq2
Second gapped sequence.

 

score

int score
The overall score value for this alignment.

 


Package neobio.gui

Class neobio.gui.AboutDialog implements Serializable

Serialized Fields

image_label

javax.swing.JLabel image_label

Class neobio.gui.NeoBio implements Serializable

Serialized Fields

file_menu

javax.swing.JMenu file_menu

help_menu

javax.swing.JMenu help_menu

menu_bar

javax.swing.JMenuBar menu_bar

new_alignment_item

javax.swing.JMenuItem new_alignment_item

exit_menuitem

javax.swing.JMenuItem exit_menuitem

about_menuitem

javax.swing.JMenuItem about_menuitem

mid_separator

javax.swing.JSeparator mid_separator

file_toolbar

javax.swing.JToolBar file_toolbar

toolbar_panel

javax.swing.JPanel toolbar_panel

alignment_button

javax.swing.JButton alignment_button

desktop_pane

javax.swing.JDesktopPane desktop_pane

Class neobio.gui.PairwiseAlignmentFrame implements Serializable

Serialized Fields

parent_frame

java.awt.Frame parent_frame

input_panel

javax.swing.JPanel input_panel

scoring_panel

javax.swing.JPanel scoring_panel

algorithm_panel

javax.swing.JPanel algorithm_panel

output_panel

javax.swing.JPanel output_panel

progress_tab_panel

javax.swing.JPanel progress_tab_panel

output_tab_panel

javax.swing.JPanel output_tab_panel

seq1_field

javax.swing.JTextField seq1_field

seq2_field

javax.swing.JTextField seq2_field

matrix_field

javax.swing.JTextField matrix_field

output_field

javax.swing.JTextField output_field

match_field

javax.swing.JTextField match_field

mismatch_field

javax.swing.JTextField mismatch_field

gap_field

javax.swing.JTextField gap_field

progress_area

javax.swing.JTextArea progress_area

output_area

javax.swing.JTextArea output_area

find_seq1_button

javax.swing.JButton find_seq1_button

find_seq2_button

javax.swing.JButton find_seq2_button

find_output_button

javax.swing.JButton find_output_button

find_matrix_button

javax.swing.JButton find_matrix_button

run_button

javax.swing.JButton run_button

algorithm_combo

javax.swing.JComboBox algorithm_combo

output_tab

javax.swing.JTabbedPane output_tab

screen_button

javax.swing.JRadioButton screen_button

file_button

javax.swing.JRadioButton file_button

basic_button

javax.swing.JRadioButton basic_button

matrix_button

javax.swing.JRadioButton matrix_button

scoring_group

javax.swing.ButtonGroup scoring_group

output_group

javax.swing.ButtonGroup output_group

seq1_label

javax.swing.JLabel seq1_label

seq2_label

javax.swing.JLabel seq2_label

match_label

javax.swing.JLabel match_label

mismatch_label

javax.swing.JLabel mismatch_label

gap_label

javax.swing.JLabel gap_label

find_dialog

javax.swing.JFileChooser find_dialog

output_to_file

boolean output_to_file

basic_scheme

boolean basic_scheme

algorithm_name

java.lang.String[] algorithm_name

algorithm

PairwiseAlignmentAlgorithm[] algorithm


SourceForge.net

http://neobio.sourceforge.net
NeoBio is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. NeoBio is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with NeoBio; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA.