Serialized Form
gapped_seq1
java.lang.String gapped_seq1
First gapped sequence.
score_tag_line
java.lang.String score_tag_line
The score tag line.
gapped_seq2
java.lang.String gapped_seq2
Second gapped sequence.
score
int score
The overall score value for this alignment.
image_label
javax.swing.JLabel image_label
file_menu
javax.swing.JMenu file_menu
help_menu
javax.swing.JMenu help_menu
menu_bar
javax.swing.JMenuBar menu_bar
new_alignment_item
javax.swing.JMenuItem new_alignment_item
exit_menuitem
javax.swing.JMenuItem exit_menuitem
about_menuitem
javax.swing.JMenuItem about_menuitem
mid_separator
javax.swing.JSeparator mid_separator
file_toolbar
javax.swing.JToolBar file_toolbar
toolbar_panel
javax.swing.JPanel toolbar_panel
alignment_button
javax.swing.JButton alignment_button
desktop_pane
javax.swing.JDesktopPane desktop_pane
parent_frame
java.awt.Frame parent_frame
input_panel
javax.swing.JPanel input_panel
scoring_panel
javax.swing.JPanel scoring_panel
algorithm_panel
javax.swing.JPanel algorithm_panel
output_panel
javax.swing.JPanel output_panel
progress_tab_panel
javax.swing.JPanel progress_tab_panel
output_tab_panel
javax.swing.JPanel output_tab_panel
seq1_field
javax.swing.JTextField seq1_field
seq2_field
javax.swing.JTextField seq2_field
matrix_field
javax.swing.JTextField matrix_field
output_field
javax.swing.JTextField output_field
match_field
javax.swing.JTextField match_field
mismatch_field
javax.swing.JTextField mismatch_field
gap_field
javax.swing.JTextField gap_field
progress_area
javax.swing.JTextArea progress_area
output_area
javax.swing.JTextArea output_area
find_seq1_button
javax.swing.JButton find_seq1_button
find_seq2_button
javax.swing.JButton find_seq2_button
find_output_button
javax.swing.JButton find_output_button
find_matrix_button
javax.swing.JButton find_matrix_button
run_button
javax.swing.JButton run_button
algorithm_combo
javax.swing.JComboBox algorithm_combo
output_tab
javax.swing.JTabbedPane output_tab
screen_button
javax.swing.JRadioButton screen_button
file_button
javax.swing.JRadioButton file_button
basic_button
javax.swing.JRadioButton basic_button
matrix_button
javax.swing.JRadioButton matrix_button
scoring_group
javax.swing.ButtonGroup scoring_group
output_group
javax.swing.ButtonGroup output_group
seq1_label
javax.swing.JLabel seq1_label
seq2_label
javax.swing.JLabel seq2_label
match_label
javax.swing.JLabel match_label
mismatch_label
javax.swing.JLabel mismatch_label
gap_label
javax.swing.JLabel gap_label
find_dialog
javax.swing.JFileChooser find_dialog
output_to_file
boolean output_to_file
basic_scheme
boolean basic_scheme
algorithm_name
java.lang.String[] algorithm_name
algorithm
PairwiseAlignmentAlgorithm [] algorithm
http://neobio.sourceforge.net NeoBio is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. NeoBio is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with NeoBio; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA.