neobio.alignment

Interfaces  Matrix

Classes  AlignmentBlock BasicScoringScheme CharSequence CrochemoreLandauZivUkelson CrochemoreLandauZivUkelsonGlobalAlignment CrochemoreLandauZivUkelsonLocalAlignment Factor FactorSequence LocalAlignmentBlock NeedlemanWunsch OutMatrix PairwiseAlignment PairwiseAlignmentAlgorithm ScoringMatrix ScoringScheme Smawk SmithWaterman Trie

Exceptions  IncompatibleScoringSchemeException InvalidScoringMatrixException InvalidSequenceException